Investigation of Antibacterial Potential of Bacillus and Actinomycetes Isolated from Soil Against Drug-resistant Clinical Isolates
DOI:
https://doi.org/10.4314/ajtmbr.v8i1.6Keywords:
Actinomycetes, antibacterial activity, clinical isolates, multidrug resistant, UV inductionAbstract
Background: Bacillus and Actinomycetes are well-known antibiotic-producing soil isolates. However, there is limited information on their activity against drug-resistant clinical isolates from Nigeria. This study aimed to investigate the antibacterial potential of Bacillus and Actinomycetes isolated from soil against drug-resistant clinical isolates.
Methods: Soil samples were collected from the rhizosphere of mango trees within Caleb University, Lagos, between January and March 2024. Targeted isolation of Bacillus and Actinomycetes was performed, and clinical isolates of Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, and Salmonella typhi were subjected to antibiotic susceptibility testing. The crowded plate method screened for antibiotic-producing isolates, and UV-induced mutation (2-hour and 4-hour exposures) was applied to assess changes in antibacterial activity.
Results: Bacillus species (71.4%) were the most prevalent soil isolates. All clinical isolates showed multidrug resistance. Before UV exposure, only Actinomycetes exhibited antibacterial activity against Pseudomonas aeruginosa and E. coli. After UV exposure, all soil isolates showed inhibitory activity against at least one clinical isolate.
Conclusion: The antibacterial activity of antibiotic-producing soil bacteria can be enhanced through UV induction, suggesting a promising strategy for developing new antimicrobial compounds.
References
Schloss PD, Handelsman J. Toward a census of bacteria in soil. PLoS Comput Biol. 2006;2:e92.
Banerjee S, Van der Heijden MGA. Soil microbiomes and One Health. Nat Rev Microbiol. 2023;21:6–20.
Fan K, Weisenhorn P, Gilbert JA, Chu H. Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil. Soil Biol Biochem. 2018;125:51–260.
Klibi N, Ben Slimen N, Fhoula I, López M, Ben Slama K, Daffonchio D, Boudabous A, Torres C, Ouzari H. Genotypic diversity, antibiotic resistance, and bacteriocin production of Enterococci isolated from rhizospheres. Microbes Environ. 2012;27:533–537.
Oburger E, Gruber B, Wanek W, Watzinger A, Stanetty C, Schindlegger Y, Hann S, Schenkeveld WDC, Kraemer SM, Puschenreiter M. Microbial decomposition of 13C-labeled phytosiderophores in the rhizosphere of wheat. Soil Biol Biochem. 2016;98:196–207.
Fanin N, Kardol P, Farrell M, Nilsson MC, Gundale MJ, Wardle DA. The ratio of Gram-positive to Gram-negative bacterial PLFA markers as an indicator of carbon availability in organic soils. Soil Biol Biochem. 2019;128:111–114.
Reddy BVB, Kallifidas D, Kim JH, Charlop-Powers Z, Feng Z, Brady SF. Natural product biosynthetic gene diversity in geographically distinct soil microbiomes. Appl Environ Microbiol. 2012;78:3744–3752.
Reyes A, Wang B, Selleck EM, Sommer MOA, Dantas G. The shared antibiotic resistome of soil bacteria and human pathogens. Science. 2012;337(6098):1107–1111.
World Health Organization (WHO). Antimicrobial resistance. 2022. Available from: https://www.who.int/news-room/fact-sheets/detail/antimicrobial-resistance
.
Coculescu B. Antimicrobial resistance induced by genetic changes. J Med Life. 2009;2(2):114–123.
Al Amin M, Hoque MN, Siddiki AZ, Saha S, Kamal MM. Antimicrobial resistance situation in animal health of Bangladesh. Vet World. 2020;13:2713–2727.
Alanber MN, Alharbi NS, Khaled JM. Evaluation of multidrug-resistant Bacillus strains causing public health risks in powdered infant milk formulas. J Infect Public Health. 2020;13:1462–1468.
Rather MA, Aulakh RS, Gill JPS, Mir AQ, Hassan MN. Detection and sequencing of plasmid-encoded tetracycline resistance determinants (tetA and tetB) from foodborne Bacillus cereus isolates. Asian Pac J Trop Med. 2012;5:709–712.
Alrumman S, Mostafa YSM, Al-Qahtani S, Taha THT. Hydrolytic enzyme production by thermophilic bacteria isolated from Saudi hot springs. Open Life Sci. 2018;13(1):470–480.
Salem MME, Ayesh AM, Gomaa MNED, Abouwarda AM. Isolation and identification of thermophilic bacteria from Al-Laith hot springs and detection of their ability to produce protease enzyme. Am Eurasian J Agric Environ Sci. 2016;16(7):1227–1236.
Shakhatreh MAK, Jacob JH, Hussein EI, Masadeh MM, Obeidat SM, Juhmani AF, Abd Al-razaq MA. Microbiological analysis, antimicrobial activity, and heavy metals content of Jordanian hot springs water. J Infect Public Health. 2017;10(6):789–793.
Lele OH, Deshmukh PV. Isolation and characterization of thermophilic Bacillus sp. with extracellular enzymatic activities from hot springs of Ganeshpuri, Maharashtra, India. Int J Appl Res. 2016;2(5):427–430.
Tabbene O, Ben Slimene I, Bouabdallah F, Mangoni ML, Urdaci MC, Limam F. Production of anti-methicillin-resistant Staphylococcus activity from Bacillus subtilis strain B38 newly isolated from soil. Appl Biochem Biotechnol. 2009;157:407–419.
Schallmey M, Singh A, Ward OP. Developments in the use of Bacillus species for industrial production. Can J Microbiol. 2005;50(1):1–17.
Stein T. Bacillus subtilis antibiotics: structures, syntheses, and specific functions. Mol Microbiol. 2005;56(4):845–857.
Abriouel H, Franz CM, Omar NB, Gálvez A. Diversity and applications of Bacillus bacteriocins. FEMS Microbiol Rev. 2011;35(1):201–232.
Berdy J. Thoughts and facts about antibiotics: where we are now and where we are heading. J Antibiot. 2012;65(8):385–395.
Singh LS, Sharma H, Talukdar NC. Production of potent antimicrobial agent by Streptomyces sannanensis strain SU118 isolated from Loktak Lake, India. BMC Microbiol. 2014;14:1–13.
Sachito DC, Oliveira LGD. Unveiling the bacterial sesquiterpenome of Streptomyces sp. CBMAI 2042 discloses cyclases with versatile performances. J Braz Chem Soc. 2022;33:734–742.
Elshafie HS, De Martino L, Formisano C, Caputo L, De Feo V, Camele I. Chemical identification of secondary metabolites from rhizospheric Actinomycetes using LC-MS analysis: In-silico antifungal evaluation and growth-promoting effects. Plants. 2023;12(9):1–15.
Clinical and Laboratory Standards Institute (CLSI). Performance Standards for Antimicrobial Susceptibility Testing, 31st Informational Supplement. CLSI Document M100-S29. 2022.
Sapkota A, Thapa A, Budhathoki A, Sainju M, Shrestha P, Aryal S. Isolation and screening of antimicrobial-producing Actinomycetes from soil samples. Int J Microbiol. 2020;27(1):65–84.
Ismail M, Ahmed I. Detection of antibiotic-producing bacteria from soil samples in parts of Wudil Local Government Area, Kano State, Nigeria. Dutse J Pure Appl Sci. 2022;7(4a):77–85.
Yahya G, Ebada A, Khalaf EM, Mansour B, Nouh NA, Mosbah RA, Saber S, Moustafa M, Negm S, El-Sokkary MMA, El-Baz AM. Soil-associated Bacillus species: a reservoir of bioactive compounds with potential therapeutic activity. Microorganisms. 2021;9(6):1131.
Shrestha B, Nath DK, Maharjan A, Poudel A, Pradhan RN, Aryal S. Isolation and characterization of potential antibiotic-producing Actinomycetes from water and soil sediments of Nepal. Int J Microbiol. 2021;55(8):61–65.
Lister PD, Wolter DJ, Hanson ND. Antibacterial-resistant Pseudomonas aeruginosa: clinical impact and regulation of chromosomal resistance mechanisms. Clin Microbiol Rev. 2009;22(4):582–610.
Ezeanya-Bakpa CC, Martins JB. Transmission of antibiotic-resistant bacteria through laptop keyboards among students of a tertiary institution in Lagos, Nigeria. J Bio Res Biotech. 2024;22(2):2362–2368.
Ezeanya-Bakpa CC, Agbakoba NR, Aguigwe A, Ikuepamitan K. Comparison of prevalence and risk factors for methicillin-resistant Staphylococcus aureus in two tertiary institutions, Southern Nigeria. Sokoto J Med Lab Sci. 2023;8(3):73–81.
Ibnouf EO. The effect of UV radiation on Actinomycetes in producing bioactive compounds in different growth conditions. Saudi J Biol Sci. 2021;28(8):4619–4625.
Chaudhary HS, Yadav J, Shrivastava AR, Singh S, Singh AK, Gopalan N. Antibacterial activity of Actinomycetes isolated from soil samples of central India. J Adv Pharm Technol Res. 2013;4(2):118–123.
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Data supporting the findings of this study are available from the corresponding author upon reasonable request.
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